[Flexiblesusy-commits] [FlexibleSUSY/FlexibleSUSY] dc275e: adding fcc and mcc scripts from Thomas Hahn

GitHub noreply at github.com
Mon Aug 29 12:29:46 BST 2016


  Branch: refs/heads/development
  Home:   https://github.com/FlexibleSUSY/FlexibleSUSY
  Commit: dc275e55f7738eefcd464604ddf24bd3f78f598b
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/dc275e55f7738eefcd464604ddf24bd3f78f598b
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-22 (Wed, 22 Jun 2016)

  Changed paths:
    A config/fcc
    A config/mcc
    M config/module.mk

  Log Message:
  -----------
  adding fcc and mcc scripts from Thomas Hahn


  Commit: 187099e4d99618948692c39f8684fe6b4da30ea2
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/187099e4d99618948692c39f8684fe6b4da30ea2
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-23 (Thu, 23 Jun 2016)

  Changed paths:
    M config/Makefile.in
    A config/libsyntax.mk

  Log Message:
  -----------
  add Makefile module including a function to change the linking syntax

for libaries


  Commit: 355a6f5dcdaf5480f8ca668ccff62bbe9a4035c9
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/355a6f5dcdaf5480f8ca668ccff62bbe9a4035c9
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-23 (Thu, 23 Jun 2016)

  Changed paths:
    M config/libsyntax.mk

  Log Message:
  -----------
  avoid explicit occurrence of library extension


  Commit: c4153596ada80bfecb51d3e64e5f59e20015ca2e
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/c4153596ada80bfecb51d3e64e5f59e20015ca2e
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-23 (Thu, 23 Jun 2016)

  Changed paths:
    M config/Makefile.in
    M config/module.mk
    M templates/module.mk.in

  Log Message:
  -----------
  adding make target for MathLink executable


  Commit: 82e629a3e3d20fab9a6e741d18c8543c029fc644
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/82e629a3e3d20fab9a6e741d18c8543c029fc644
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-23 (Thu, 23 Jun 2016)

  Changed paths:
    M config/libsyntax.mk

  Log Message:
  -----------
  adding documentation of libsyntax function


  Commit: 38e5b96493cfbd24998815f7689a7e8d2fd6fe91
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/38e5b96493cfbd24998815f7689a7e8d2fd6fe91
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    M meta/FlexibleSUSY.m
    A templates/mathlink.cpp.in
    A templates/mathlink.tm.in
    M templates/module.mk

  Log Message:
  -----------
  adding stub mathlink files


  Commit: b96d63ba25c1143b741147c4b4b48ea5e67756a4
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b96d63ba25c1143b741147c4b4b48ea5e67756a4
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in
    M templates/mathlink.tm.in

  Log Message:
  -----------
  adding setter for SM input parameters


  Commit: 736c43a810f05a8a411a73e646b983c3c09d509a
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/736c43a810f05a8a411a73e646b983c3c09d509a
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in
    M templates/mathlink.tm.in

  Log Message:
  -----------
  rename input charm mass

defined to be mc(mc)


  Commit: 811aaec0136f77d622e401241998d60f5e288c5a
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/811aaec0136f77d622e401241998d60f5e288c5a
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  fix remaining occurrence of mc2GeV


  Commit: 9698a77487c854b91c59498fe3d27dabd7871c75
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9698a77487c854b91c59498fe3d27dabd7871c75
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in
    M templates/mathlink.tm.in

  Log Message:
  -----------
  adding getter for SM parameters


  Commit: c854dae598e5bb6879577a71d8378e06f31efbb5
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/c854dae598e5bb6879577a71d8378e06f31efbb5
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    M meta/FlexibleSUSY.m
    M meta/Parameters.m

  Log Message:
  -----------
  Merge branch 'development' into feature-mathlink


  Commit: 2d552156fd9a67a9a36377bac3681031ffdcea29
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/2d552156fd9a67a9a36377bac3681031ffdcea29
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    M meta/FlexibleSUSY.m
    M meta/Parameters.m

  Log Message:
  -----------
  Merge branch 'development' into feature-mathlink


  Commit: f9b7f101834df3f9f2c8ecf050b46754b3499be6
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/f9b7f101834df3f9f2c8ecf050b46754b3499be6
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in
    M templates/mathlink.tm.in

  Log Message:
  -----------
  adding getter and setter for spectrum generator settings


  Commit: 34e2d3ffeba90a543a73435e290e100101fd0acf
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/34e2d3ffeba90a543a73435e290e100101fd0acf
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    A src/mathlink_macros.hpp

  Log Message:
  -----------
  adding header file with MathLink macros


  Commit: 44d40e1229be8363ab866fd9f879dda80a28570c
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/44d40e1229be8363ab866fd9f879dda80a28570c
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    A meta/FSMathLink.m
    M meta/FlexibleSUSY.m
    M meta/module.mk
    M templates/mathlink.cpp.in
    M templates/mathlink.tm.in

  Log Message:
  -----------
  adding input parameter getter


  Commit: 05870a6cbe9b8d99e90149f2b405361d8e228a72
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/05870a6cbe9b8d99e90149f2b405361d8e228a72
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m
    M src/mathlink_macros.hpp

  Log Message:
  -----------
  implement meta code Put function calls for remaining types


  Commit: 0cd4dea37186af24b68721c11c04520dbc7dccd3
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0cd4dea37186af24b68721c11c04520dbc7dccd3
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    M templates/mathlink.tm.in

  Log Message:
  -----------
  avoid shdw warnings if multiple MathLink modules are installed

in the same kernel


  Commit: 6381e87770744855487ed9085ee5ac8c6fc958a6
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/6381e87770744855487ed9085ee5ac8c6fc958a6
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m
    M meta/FlexibleSUSY.m
    M templates/mathlink.cpp.in
    M templates/mathlink.tm.in

  Log Message:
  -----------
  adding input parameter setter stub


  Commit: 9e553228445da8d1f3e920c0642e26af9a101de8
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9e553228445da8d1f3e920c0642e26af9a101de8
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m
    M meta/FlexibleSUSY.m

  Log Message:
  -----------
  create list of argument types for setting the input parameters


  Commit: 9fb48ff409d941b6dfbad3f2a6cf26985f6a62b1
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9fb48ff409d941b6dfbad3f2a6cf26985f6a62b1
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-24 (Fri, 24 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m
    M meta/FlexibleSUSY.m

  Log Message:
  -----------
  generate arguments for the input parameter setter


  Commit: 3f911f39f976dc228ed2f32af5c9d6bca31b2a99
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/3f911f39f976dc228ed2f32af5c9d6bca31b2a99
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m
    M meta/FlexibleSUSY.m
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  adding argument types to C function for setting input parameters


  Commit: 80c2e330fcc5fdf653fe71fcb9ecf04ab0e0ac31
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/80c2e330fcc5fdf653fe71fcb9ecf04ab0e0ac31
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  indentation


  Commit: 79943380a1a449737b4187e50dc7f45b5e9f76ed
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/79943380a1a449737b4187e50dc7f45b5e9f76ed
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m
    M meta/FlexibleSUSY.m

  Log Message:
  -----------
  set input parameters from C function arguments


  Commit: 7400add1fda04a009df4a9010125277b0ad059f5
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/7400add1fda04a009df4a9010125277b0ad059f5
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M src/mathlink_macros.hpp

  Log Message:
  -----------
  implement rule to Complex


  Commit: 73927ddaea1bd176f0180a4429db2a8b6b7468ce
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/73927ddaea1bd176f0180a4429db2a8b6b7468ce
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m
    M meta/FlexibleSUSY.m
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  Implement output of pole masses and mixing matrices


  Commit: 90a8a95cbf7442dbdcedf03bc31e484f53b59dcd
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/90a8a95cbf7442dbdcedf03bc31e484f53b59dcd
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M meta/Parameters.m

  Log Message:
  -----------
  Merge branch 'development' into feature-mathlink


  Commit: 3917b07cb280141eb7fc5f6ea02cdab3244c07af
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/3917b07cb280141eb7fc5f6ea02cdab3244c07af
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in
    M templates/mathlink.tm.in

  Log Message:
  -----------
  add warning if pole mass loop order != EWSB loop order


  Commit: 0bce082204b63fda8e35eca954e227c7606d900b
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0bce082204b63fda8e35eca954e227c7606d900b
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  include wrappers.hpp


  Commit: fce8bee18569989051df635f1226f45d2c86c9b5
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/fce8bee18569989051df635f1226f45d2c86c9b5
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m
    M meta/FlexibleSUSY.m

  Log Message:
  -----------
  ignore input blocks


  Commit: b297883235eb8cb455753406332abca36b704c6f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b297883235eb8cb455753406332abca36b704c6f
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M src/mathlink_macros.hpp

  Log Message:
  -----------
  reorder mathlink macros for readability


  Commit: d79278707ed4df70f174c42641c99e52138048b6
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/d79278707ed4df70f174c42641c99e52138048b6
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m
    M meta/FlexibleSUSY.m
    M src/mathlink_macros.hpp
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  write pole and running masses separately


  Commit: 8cbbdb7e0f667dd518be1b88d4c708dae85156b5
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/8cbbdb7e0f667dd518be1b88d4c708dae85156b5
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m
    M meta/FlexibleSUSY.m
    M meta/Parameters.m

  Log Message:
  -----------
  adding renormalization scale to list of output parameters


  Commit: 191aca110e7848b550a54bde2a24a02482a80527
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/191aca110e7848b550a54bde2a24a02482a80527
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M src/mathlink_macros.hpp

  Log Message:
  -----------
  including mathlink.h


  Commit: 5df458ff8936d9826cb620395bc87c8420319768
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/5df458ff8936d9826cb620395bc87c8420319768
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M templates/module.mk.in

  Log Message:
  -----------
  generating dependency file for mathlink.cpp


  Commit: 068e2dd4dc4663377d4104df7441a165a5f94472
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/068e2dd4dc4663377d4104df7441a165a5f94472
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M templates/module.mk.in

  Log Message:
  -----------
  indentation


  Commit: 93905f08b98f3c4c0565d807859b2d359327bb39
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/93905f08b98f3c4c0565d807859b2d359327bb39
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M meta/FlexibleSUSY.m

  Log Message:
  -----------
  adding debug output


  Commit: aa5783c2519926cc083b9ec0f05e815aafa77483
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/aa5783c2519926cc083b9ec0f05e815aafa77483
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m
    M src/mathlink_macros.hpp
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  use templated C++ functions to put MathLink symbols


  Commit: 97d8f3eed165e9873d4bf071260286f31b625664
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/97d8f3eed165e9873d4bf071260286f31b625664
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M meta/FlexibleSUSY.m
    M templates/mathlink.tm.in

  Log Message:
  -----------
  extend description of setters


  Commit: 7f312c1011eb09f6a6cf4e71f1e6169bbfee17ff
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/7f312c1011eb09f6a6cf4e71f1e6169bbfee17ff
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m
    M src/mathlink_macros.hpp

  Log Message:
  -----------
  write explicit Pole[] and M[] heads


  Commit: 0db747bf9a656c23d524919d156ac75fb9a2f51d
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0db747bf9a656c23d524919d156ac75fb9a2f51d
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M meta/CConversion.m

  Log Message:
  -----------
  make GreeQ helper function public


  Commit: e3cf977f05b48ca09c973b8d2f83cc62a0c8754a
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/e3cf977f05b48ca09c973b8d2f83cc62a0c8754a
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m
    M src/mathlink_macros.hpp

  Log Message:
  -----------
  convert keep greek symbols in Wolfram format


  Commit: 6413bcc234610b2e8471609a346e35c9fc6f00bf
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/6413bcc234610b2e8471609a346e35c9fc6f00bf
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  cast integers to (int)


  Commit: 95c14afe2c77ca15bb50b8ef1869273cc9768c16
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/95c14afe2c77ca15bb50b8ef1869273cc9768c16
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M test/module.mk
    A test/test_CMSSM_mathlink.in.spc
    A test/test_CMSSM_mathlink.m

  Log Message:
  -----------
  adding test to compare the MathLink and SLHA results in the CMSSM


  Commit: bb9bf5475ac388bfd6f807e4a47e571eeca34728
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/bb9bf5475ac388bfd6f807e4a47e571eeca34728
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M meta/ReadSLHA.m

  Log Message:
  -----------
  Merge branch 'development' into feature-mathlink


  Commit: 0b94a329263eeeddb80493f068f04647fb9671b4
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0b94a329263eeeddb80493f068f04647fb9671b4
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  return $Failed in case of an error


  Commit: cfd725ce047f0da026a57c0ed68d24140141c6fe
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/cfd725ce047f0da026a57c0ed68d24140141c6fe
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  print problems and warnings in any case


  Commit: ffc1f132b6c4464ca96add0e15f2331643defd08
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/ffc1f132b6c4464ca96add0e15f2331643defd08
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M README
    M doc/mainpage.dox.in
    A doc/mathlink.dox

  Log Message:
  -----------
  adding basic documentation for the MathLink interface


  Commit: a0a19a60149f224d8724dddae980ea54fefac3d2
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/a0a19a60149f224d8724dddae980ea54fefac3d2
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-25 (Sat, 25 Jun 2016)

  Changed paths:
    M doc/slha_input.dox

  Log Message:
  -----------
  Merge branch 'development' into feature-mathlink


  Commit: c2bf27e52e84f90f826da993a43976d530a36aeb
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/c2bf27e52e84f90f826da993a43976d530a36aeb
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M doc/mathlink.dox

  Log Message:
  -----------
  describe installation of MathLink executable


  Commit: d413d90b9e8d04df2fcbd05245b32cb3f4dc0fc5
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/d413d90b9e8d04df2fcbd05245b32cb3f4dc0fc5
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M config/Makefile.in

  Log Message:
  -----------
  adding `mathlink' target for the user

to build the mathlink executables


  Commit: 0f051d272f979c175a0cc3f9de64187698fa6c05
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0f051d272f979c175a0cc3f9de64187698fa6c05
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M config/module.mk

  Log Message:
  -----------
  adding libsyntax.mk to installed files


  Commit: 7244fc71da1ccc253c7d95da632ad9c5d8cf47c5
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/7244fc71da1ccc253c7d95da632ad9c5d8cf47c5
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  make model class global

in order to reuse it to calculate the observables


  Commit: 6cbb9bdbe4106e5ef923687973a90a0a7351e3d9
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/6cbb9bdbe4106e5ef923687973a90a0a7351e3d9
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m
    M meta/FlexibleSUSY.m
    M meta/Observables.m
    M templates/mathlink.cpp.in
    M templates/mathlink.tm.in

  Log Message:
  -----------
  calculate observables


  Commit: 80f41e05c6606b3214f53467d64121d875d48f11
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/80f41e05c6606b3214f53467d64121d875d48f11
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M test/test_CMSSM_mathlink.in.spc
    M test/test_CMSSM_mathlink.m

  Log Message:
  -----------
  test calculation of observables


  Commit: 321fee56480c70d5adc549e0f78f4940952452e6
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/321fee56480c70d5adc549e0f78f4940952452e6
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M README
    M doc/mathlink.dox

  Log Message:
  -----------
  adding documentation for FSCMSSMCalculateObservables[]


  Commit: 399e3c943e52eacd2e7559728aaaeb16cd3b0bf2
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/399e3c943e52eacd2e7559728aaaeb16cd3b0bf2
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  catch exceptions from observable calculation


  Commit: d15945b8cf2eae3c8804b2f4fa7fd16e9fd8750e
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/d15945b8cf2eae3c8804b2f4fa7fd16e9fd8750e
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M meta/ReadSLHA.m
    M test/test_ReadSLHA.m

  Log Message:
  -----------
  Merge branch 'development' into feature-mathlink


  Commit: b9e86c151c7931ce2d5038f21a71743e6ee78474
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b9e86c151c7931ce2d5038f21a71743e6ee78474
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M meta/ReadSLHA.m
    M meta/ThresholdCorrections.m

  Log Message:
  -----------
  Merge branch 'development' into feature-mathlink


  Commit: 3688bb1b966e0d5f47f480397dcb9364334eddc4
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/3688bb1b966e0d5f47f480397dcb9364334eddc4
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M meta/FSMathLink.m

  Log Message:
  -----------
  simplify generation of initial values


  Commit: 1f6b402e8f451fb20bdfee8368a5357f1bef7a00
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/1f6b402e8f451fb20bdfee8368a5357f1bef7a00
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M meta/ReadSLHA.m

  Log Message:
  -----------
  Merge branch 'development' into feature-mathlink


  Commit: b11858d81c91d4ab955cab5241a3c5ba413a1b50
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b11858d81c91d4ab955cab5241a3c5ba413a1b50
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  shorten message put function


  Commit: f01c09041e70e64e104ee2e7af63f5737e505daa
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/f01c09041e70e64e104ee2e7af63f5737e505daa
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  Bugfix: initialize QedQcd class each time

to avoid a strange bug, where the output of the QedQcd class changes
each time to() is called.  Probably, the to() function can still not
be called multiple times.


  Commit: 05a0c42d015cebbaa7416dbfd836ac0559c7f891
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/05a0c42d015cebbaa7416dbfd836ac0559c7f891
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M test/test_CMSSM_mathlink.m

  Log Message:
  -----------
  test that re-calculating the spectrum yields exactly the same


  Commit: 9b26ae04287a1e674456825ece3e3d3c9860746a
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9b26ae04287a1e674456825ece3e3d3c9860746a
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M .gitignore

  Log Message:
  -----------
  ignore f++


  Commit: 7c6ae4be5b36ce46a208dc51fb44271d2d22a0df
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/7c6ae4be5b36ce46a208dc51fb44271d2d22a0df
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-26 (Sun, 26 Jun 2016)

  Changed paths:
    M test/test_CMSSM_mathlink.m

  Log Message:
  -----------
  adding debug output for test


  Commit: c81b3a32be5a70c9f26a84bbe154b44aac24ec97
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/c81b3a32be5a70c9f26a84bbe154b44aac24ec97
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-27 (Mon, 27 Jun 2016)

  Changed paths:
    M ChangeLog
    M addons/GM2Calc/MSSMNoFV_onshell.cpp
    M addons/GM2Calc/MSSMNoFV_onshell.hpp
    M addons/GM2Calc/gm2_1loop.cpp
    M addons/GM2Calc/gm2_2loop.cpp
    M addons/GM2Calc/gm2_mb.cpp
    M addons/GM2Calc/gm2_uncertainty.cpp
    M addons/GM2Calc/gm2_uncertainty.hpp
    M addons/GM2Calc/gm2calc.cpp
    M addons/GM2Calc/gm2scan.cpp
    M configure
    M src/lowe.cpp
    M test/test_MSSMNoFV_onshell.cpp
    M test/test_gm2calc.cpp
    M test/test_lowe.cpp

  Log Message:
  -----------
  Merge branch 'development' into feature-mathlink


  Commit: 0d432b10a835b0aa018cea10f615fa2ca441b120
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0d432b10a835b0aa018cea10f615fa2ca441b120
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-27 (Mon, 27 Jun 2016)

  Changed paths:
    M test/test_CMSSM_mathlink.m

  Log Message:
  -----------
  use Needs[] instead of Get[]


  Commit: cb67d3fcdb5e6e624cc2cf5f6b71d2339d18f4e4
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/cb67d3fcdb5e6e624cc2cf5f6b71d2339d18f4e4
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-28 (Tue, 28 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in
    M templates/mathlink.tm.in

  Log Message:
  -----------
  redirect stdout and stderr to a Mathematica message


  Commit: f3826ce06591648fbd0c5af66c7378aeaaaed8e1
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/f3826ce06591648fbd0c5af66c7378aeaaaed8e1
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-28 (Tue, 28 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  release buffer


  Commit: e52b7fca284c195673a73ffdd9c574a358d95e4a
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/e52b7fca284c195673a73ffdd9c574a358d95e4a
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-28 (Tue, 28 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  put info messages line by line


  Commit: c7b6d92af74cb6194e9be1de67c80838c67147dd
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/c7b6d92af74cb6194e9be1de67c80838c67147dd
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-28 (Tue, 28 Jun 2016)

  Changed paths:
    M templates/module.mk.in

  Log Message:
  -----------
  adding f++ and fcc as dependencies for the mathlink executable


  Commit: d3de3074b596fd0fe73b61151d59560aca39399f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/d3de3074b596fd0fe73b61151d59560aca39399f
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-28 (Tue, 28 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  reorder functions and add comments


  Commit: ff4c6d316e48380164a0bbbee85f93bf18524862
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/ff4c6d316e48380164a0bbbee85f93bf18524862
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-28 (Tue, 28 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  rename variable


  Commit: f62370bdcc9afb8ca87c4f0b56d3bd53a9444a01
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/f62370bdcc9afb8ca87c4f0b56d3bd53a9444a01
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-28 (Tue, 28 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in

  Log Message:
  -----------
  adding comment about Trick 17


  Commit: 662cdacb9f2d836e71008bfe5eddcc80a6540d6b
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/662cdacb9f2d836e71008bfe5eddcc80a6540d6b
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-28 (Tue, 28 Jun 2016)

  Changed paths:
    M templates/mathlink.cpp.in
    M templates/mathlink.tm.in

  Log Message:
  -----------
  use model-specific message type


  Commit: 720ed7f10759a186bba2819b42e23d74fc752c4e
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/720ed7f10759a186bba2819b42e23d74fc752c4e
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-28 (Tue, 28 Jun 2016)

  Changed paths:
    M doc/mathlink.dox

  Log Message:
  -----------
  adding documentation for re-directing the info messages


  Commit: 3671766873a9e5dabec07c07de55e686c6b59fa4
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/3671766873a9e5dabec07c07de55e686c6b59fa4
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-28 (Tue, 28 Jun 2016)

  Changed paths:
    M doc/mathlink.dox

  Log Message:
  -----------
  adding build example for the MathLink executable


  Commit: 84694d7c1d79755563f6eb8cc71a86e2b38b8aa5
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/84694d7c1d79755563f6eb8cc71a86e2b38b8aa5
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-29 (Wed, 29 Jun 2016)

  Changed paths:
    M src/mycomplex.h

  Log Message:
  -----------
  fix uninitialized variable warning


  Commit: e8b56b7f8f458e35cfd5d2361c1642dfd18ed418
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/e8b56b7f8f458e35cfd5d2361c1642dfd18ed418
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-06-30 (Thu, 30 Jun 2016)

  Changed paths:
    M src/mathlink_macros.hpp

  Log Message:
  -----------
  avoid unnecessary macro definition


  Commit: 12be98edbccf1bd7d2c4055594d31e9887455f2c
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/12be98edbccf1bd7d2c4055594d31e9887455f2c
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-08 (Fri, 08 Jul 2016)

  Changed paths:
    M config/fcc

  Log Message:
  -----------
  move static libraries behind object files


  Commit: 54b0a7c54ede4774472a9cfdede8116d6f738360
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/54b0a7c54ede4774472a9cfdede8116d6f738360
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-08 (Fri, 08 Jul 2016)

  Changed paths:
    M config/Makefile.in
    R config/libsyntax.mk
    M templates/module.mk.in

  Log Message:
  -----------
  link MathLink executable with absolute paths to FlexibleSUSY libraries


  Commit: 633ec78e1dae772ff0cfe15f12461198837d9bde
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/633ec78e1dae772ff0cfe15f12461198837d9bde
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-08 (Fri, 08 Jul 2016)

  Changed paths:
    M ChangeLog
    M README
    M addons/GM2Calc/module.mk
    M addons/test_call_tsil/module.mk
    M config/Makefile.in
    M config/module.mk
    M configure
    M doc/building.dox
    M doc/module.mk
    M examples/module.mk
    M fflite/module.mk
    M legacy/module.mk
    M meta/Constraint.m
    M meta/FlexibleSUSY.m
    M meta/LoopMasses.m
    M meta/ThresholdCorrections.m
    M meta/TwoLoopMSSM.m
    M model_files/CMSSMCKM/FlexibleSUSY.m.in
    M model_files/U1xMSSM3G/FlexibleSUSY.m.in
    M slhaea/module.mk
    M src/module.mk
    M src/numerics.cpp
    A src/splitmssm_thresholds.cpp
    A src/splitmssm_thresholds.hpp
    M src/standard_model.cpp
    M templates/module.addon.mk.in
    M templates/module.mk.in
    M templates/two_scale_initial_guesser.cpp.in
    M templates/two_scale_initial_guesser_low_scale_model.cpp.in
    M templates/two_scale_low_scale_constraint.cpp.in
    M test/module.mk
    M test/test_lowe.cpp

  Log Message:
  -----------
  Merge branch 'development' into feature-mathlink

Conflicts:
	config/Makefile.in
	config/module.mk


  Commit: 98b7ce952b3ffe2a1dcd865298dc9ef546f7bcf1
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/98b7ce952b3ffe2a1dcd865298dc9ef546f7bcf1
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-09 (Sat, 09 Jul 2016)

  Changed paths:
    M config/Makefile.in
    R config/fcc
    A config/mathematica_include_paths.sh
    R config/mcc
    M config/module.mk
    M meta/FlexibleSUSY.m
    A templates/librarylink.cpp.in
    A templates/librarylink.m.in
    R templates/mathlink.cpp.in
    R templates/mathlink.tm.in
    M templates/module.mk
    M templates/module.mk.in

  Log Message:
  -----------
  adding LibraryLink stub


  Commit: 5d521050cc32d57bea7cbcb95d78cd903b25c8f3
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/5d521050cc32d57bea7cbcb95d78cd903b25c8f3
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-09 (Sat, 09 Jul 2016)

  Changed paths:
    M config/mathematica_include_paths.sh
    M templates/module.mk.in

  Log Message:
  -----------
  make math kernel command configurable


  Commit: a0d299fb694e18eb65d32eb1e8e8b37d048eb0c4
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/a0d299fb694e18eb65d32eb1e8e8b37d048eb0c4
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-09 (Sat, 09 Jul 2016)

  Changed paths:
    M config/Makefile.in
    M configure
    M templates/module.mk.in

  Log Message:
  -----------
  always compile with -fPIC and provide configure option for shared lib command


  Commit: 6902a3e4f7c2246d545aa31dc528dea57233d39c
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/6902a3e4f7c2246d545aa31dc528dea57233d39c
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-09 (Sat, 09 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in
    M templates/librarylink.m.in

  Log Message:
  -----------
  fill settings


  Commit: 65f72f7d273cb675975cecda83c5844eb7a3467f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/65f72f7d273cb675975cecda83c5844eb7a3467f
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-09 (Sat, 09 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in
    M templates/librarylink.m.in

  Log Message:
  -----------
  setting SM input parameters


  Commit: 2af43193e5113323cea9392556655d9aa49d3f1a
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/2af43193e5113323cea9392556655d9aa49d3f1a
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  use a lock_guard and put lockings into function when useful


  Commit: 3428ce94f9638a56058a8d044c2a1f9e20eaa429
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/3428ce94f9638a56058a8d044c2a1f9e20eaa429
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M templates/librarylink.m.in

  Log Message:
  -----------
  allow to pass all input parameters directly to FS at ModelName@OpenHandle


  Commit: 0d37542f272e7b8430a37f498a20ee3f73803910
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0d37542f272e7b8430a37f498a20ee3f73803910
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M templates/librarylink.m.in

  Log Message:
  -----------
  correcting function name


  Commit: ea60a38658ac8f77ebdbf699cc18014075a9e978
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/ea60a38658ac8f77ebdbf699cc18014075a9e978
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M meta/FlexibleSUSY.m
    M templates/librarylink.m.in

  Log Message:
  -----------
  pass default model input parameters


  Commit: e4ed867ba95f53377bd6ffc90a3747d0c9720bab
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/e4ed867ba95f53377bd6ffc90a3747d0c9720bab
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M meta/CConversion.m

  Log Message:
  -----------
  adding helper function returning number of entries of a given type


  Commit: 0f57f39113ffbbc731de75656e1a1e3673f05f77
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0f57f39113ffbbc731de75656e1a1e3673f05f77
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M meta/FlexibleSUSY.m
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  count total number of input parameters


  Commit: 52196aa98a9c2dec095539f65d22c840646f001b
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/52196aa98a9c2dec095539f65d22c840646f001b
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M meta/FSMathLink.m
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  set input parameters


  Commit: 86b3ad97dc25a5a28b6c82fa8e47c03944a7032d
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/86b3ad97dc25a5a28b6c82fa8e47c03944a7032d
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  throw exception in case of number of parameter mismatch


  Commit: 62ac1a485dbc680bcb7a71ada91f48bc4783451a
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/62ac1a485dbc680bcb7a71ada91f48bc4783451a
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in
    M templates/librarylink.m.in

  Log Message:
  -----------
  adding SM input parameter getter


  Commit: 70c2a60c35bdb90bf8d7a9ec35ec7700827a3be5
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/70c2a60c35bdb90bf8d7a9ec35ec7700827a3be5
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in
    M templates/librarylink.m.in

  Log Message:
  -----------
  adding getter for settings


  Commit: b200e40f96b39852be36948f4bfe10af63b1b1b5
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b200e40f96b39852be36948f4bfe10af63b1b1b5
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M meta/FlexibleSUSY.m
    M templates/librarylink.cpp.in
    M templates/librarylink.m.in

  Log Message:
  -----------
  create input parameter getter


  Commit: 716da0c430900b2f5df10b28a594518c7f3267a1
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/716da0c430900b2f5df10b28a594518c7f3267a1
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  suppress compiler warnings


  Commit: d50984cf6ae62beda705fb17d4809645cd8c09de
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/d50984cf6ae62beda705fb17d4809645cd8c09de
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M meta/FlexibleSUSY.m
    M templates/librarylink.cpp.in
    M templates/librarylink.m.in

  Log Message:
  -----------
  put spectrum


  Commit: 75ec34ab23db762f24b4028fa9c75f7e9a712d67
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/75ec34ab23db762f24b4028fa9c75f7e9a712d67
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in
    M templates/librarylink.m.in

  Log Message:
  -----------
  put observables


  Commit: 93f66d6a08da9e447a14400719ae5e2b98c89fc8
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/93f66d6a08da9e447a14400719ae5e2b98c89fc8
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  no need to re-initialize QedQcd object


  Commit: 70da9530a8dcede8a27d7da8b3753a1f5369aecd
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/70da9530a8dcede8a27d7da8b3753a1f5369aecd
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M templates/librarylink.m.in

  Log Message:
  -----------
  fix typo


  Commit: d3e97916e030693245412508c282c48ab9f3681f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/d3e97916e030693245412508c282c48ab9f3681f
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M test/test_CMSSM_mathlink.m

  Log Message:
  -----------
  adapt LibraryLink test to the new interface


  Commit: 9bd0242e1a7bd383e647cd73d05b208d77350a79
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9bd0242e1a7bd383e647cd73d05b208d77350a79
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M README

  Log Message:
  -----------
  update the README file


  Commit: e0b223c4314c47855181cff84999b7d0dfa00121
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/e0b223c4314c47855181cff84999b7d0dfa00121
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M README
    M doc/mathlink.dox

  Log Message:
  -----------
  adapt description to the new interface


  Commit: 8ccb5f792fb16ffbc57f2f055e677e212b86106b
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/8ccb5f792fb16ffbc57f2f055e677e212b86106b
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M README
    M doc/mathlink.dox
    M templates/librarylink.m.in
    M test/test_CMSSM_mathlink.m

  Log Message:
  -----------
  rename setting variable for model input parameters


  Commit: 8dee7bd62c6dbf65a00341e2938d64401c703c5a
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/8dee7bd62c6dbf65a00341e2938d64401c703c5a
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M meta/FSMathLink.m
    M meta/FlexibleSUSY.m

  Log Message:
  -----------
  remove unused function


  Commit: b6f96092de2f3553cec750c6bf754aa8913753f7
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b6f96092de2f3553cec750c6bf754aa8913753f7
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  remove duplicate newline


  Commit: c86ed4a5037c3630bc8fbf8e3fac039f52522bf9
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/c86ed4a5037c3630bc8fbf8e3fac039f52522bf9
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  add function to retrieve id from MLINK


  Commit: a321be8d6970a1dab50316ba6ea109299bdcd4e8
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/a321be8d6970a1dab50316ba6ea109299bdcd4e8
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-10 (Sun, 10 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  move argument check into separate function and rename function


  Commit: 1ae594881dc520f2112a9a530d309fc6602e75b8
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/1ae594881dc520f2112a9a530d309fc6602e75b8
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-11 (Mon, 11 Jul 2016)

  Changed paths:
    M doc/mathlink.dox
    M templates/librarylink.cpp.in
    M templates/librarylink.m.in

  Log Message:
  -----------
  re-directing cout and cerr to Mathematica


  Commit: a8dbd0d6e152021202c73d1c20ba0b7fbacf79c4
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/a8dbd0d6e152021202c73d1c20ba0b7fbacf79c4
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-11 (Mon, 11 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  remove unnecessary explicit qualifier


  Commit: b7787bb055c5d5f81d3d67a9d6edc73c0010e705
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b7787bb055c5d5f81d3d67a9d6edc73c0010e705
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-11 (Mon, 11 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  move definition of default constructor into class definition


  Commit: 9c06b576213f252ae2b6d03310c489b6c41bf9fa
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9c06b576213f252ae2b6d03310c489b6c41bf9fa
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-11 (Mon, 11 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  make used_ids a local variable


  Commit: 3d6b7eb024a435354af9908855a08187359c3d65
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/3d6b7eb024a435354af9908855a08187359c3d65
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    M src/mathlink_macros.hpp

  Log Message:
  -----------
  Prevent multiple inclusion of src/mathlink_macros.hpp


  Commit: 08a78d6e2f8ab624a9587382a30958aa823407ef
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/08a78d6e2f8ab624a9587382a30958aa823407ef
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    M src/mathlink_macros.hpp

  Log Message:
  -----------
  Add MLGet() for (long/short) int


  Commit: 01539e6ec538cec30e3236ede7f982bd5a2b4e57
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/01539e6ec538cec30e3236ede7f982bd5a2b4e57
  Author: Jae-hyeon Park <jhyeon at gmail.com>
  Date:   2016-07-12 (Tue, 12 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  Use overloaded MLGet() to get Handle_id

typedef of mint changed from int to long in Mathematica 9.
See http://mathematica.stackexchange.com/questions/19337/ .


  Commit: fa2713bae26a85d7fac9cb9b420cba59a08c2c59
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/fa2713bae26a85d7fac9cb9b420cba59a08c2c59
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-13 (Wed, 13 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  additional debug output in case of an error


  Commit: 2dd0447908e85ded4c0aba552aa1fe90061f1f13
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/2dd0447908e85ded4c0aba552aa1fe90061f1f13
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-13 (Wed, 13 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  no need to lock handle access

because in Mathematica each kernel is a separate process with its
own copy of the library (with its own address space).


  Commit: 847785337a2381c6ce7855a2c51a8279e9135d9f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/847785337a2381c6ce7855a2c51a8279e9135d9f
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-13 (Wed, 13 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  Ensure messages are printed before observables are


  Commit: c6b928bfc54aee37030664fbd6a10cbc9e74225f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/c6b928bfc54aee37030664fbd6a10cbc9e74225f
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-13 (Wed, 13 Jul 2016)

  Changed paths:
    M test/module.mk
    A test/test_CMSSM_librarylink.in.spc
    A test/test_CMSSM_librarylink.m
    R test/test_CMSSM_mathlink.in.spc
    R test/test_CMSSM_mathlink.m

  Log Message:
  -----------
  rename CMSSM LibraryLink test


  Commit: 0da15b91d9190d314c3562c24690a9211292430e
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/0da15b91d9190d314c3562c24690a9211292430e
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-13 (Wed, 13 Jul 2016)

  Changed paths:
    M meta/TestSuite.m
    M test/test_CMSSM_librarylink.m

  Log Message:
  -----------
  move relative difference test to TestSuite` module


  Commit: 235d6ad447c2c14a87f06a0ba7128008c65f12ef
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/235d6ad447c2c14a87f06a0ba7128008c65f12ef
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-13 (Wed, 13 Jul 2016)

  Changed paths:
    M meta/TestSuite.m

  Log Message:
  -----------
  adding test functions to check a < b or a > b


  Commit: 777c7d839961a8bd794c1ad6cb6a006eed659439
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/777c7d839961a8bd794c1ad6cb6a006eed659439
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-13 (Wed, 13 Jul 2016)

  Changed paths:
    M test/module.mk
    A test/test_CMSSM_librarylink_parallel.m

  Log Message:
  -----------
  adding test for parallelization of spectrum calculation


  Commit: 618530177f20369a036244cffb53401ed2362287
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/618530177f20369a036244cffb53401ed2362287
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-13 (Wed, 13 Jul 2016)

  Changed paths:
    M meta/FSMathLink.m
    M templates/librarylink.m.in

  Log Message:
  -----------
  catch case when model has no input parameters


  Commit: 266e8176ab710e0fae16c3103f790fa4fae499bf
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/266e8176ab710e0fae16c3103f790fa4fae499bf
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-18 (Mon, 18 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  catch integer overflow if too many handles have been opened


  Commit: b3881b2431bd0710d0108fd8529f46fb4c26556d
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b3881b2431bd0710d0108fd8529f46fb4c26556d
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-18 (Mon, 18 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  start counting the handles from 0

for readability


  Commit: 396048155bc1da460decca1381752f49f8e06280
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/396048155bc1da460decca1381752f49f8e06280
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-18 (Mon, 18 Jul 2016)

  Changed paths:
    R src/mathlink_macros.hpp
    A src/mathlink_utils.hpp
    M src/module.mk
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  rename mathlink utilities header


  Commit: 59ab0a38c6feca5c9059b2bdb6184c1c444f57f1
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/59ab0a38c6feca5c9059b2bdb6184c1c444f57f1
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-21 (Thu, 21 Jul 2016)

  Changed paths:
    M config/Makefile.customized-betas.in
    M config/Makefile.in
    M config/Makefile.standalone.in
    M config/Makefile.tower.in
    M configure
    M templates/module.addon.mk.in
    M templates/module.mk.in

  Log Message:
  -----------
  distinguish between lib extension for module libs and LibraryLink lib


  Commit: 149b65a58d891419de81a5aa9b41cbd5d2f0c0fe
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/149b65a58d891419de81a5aa9b41cbd5d2f0c0fe
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-21 (Thu, 21 Jul 2016)

  Changed paths:
    M addons/GM2Calc/module.mk
    M addons/test_call_tsil/module.mk
    M config/Makefile.in
    M config/flexiblesusy-config.in
    M configure
    M fflite/module.mk
    M legacy/module.mk
    M src/module.mk
    M templates/module.addon.mk.in
    M templates/module.mk.in
    M test/module.mk

  Log Message:
  -----------
  distinguish between lib command for module libs and LibraryLink lib


  Commit: 6b4e0eac8388a2272907bc0fab3b8baadc3cc5bc
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/6b4e0eac8388a2272907bc0fab3b8baadc3cc5bc
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-21 (Thu, 21 Jul 2016)

  Changed paths:
    M config/Makefile.in
    M config/config.h.in
    M configure
    M templates/module.mk.in

  Log Message:
  -----------
  allow user to enable/disable building the LibraryLink


  Commit: 1ef06af5dc23005f3ec982cad0a4a779ef3a16bd
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/1ef06af5dc23005f3ec982cad0a4a779ef3a16bd
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-21 (Thu, 21 Jul 2016)

  Changed paths:
    M config/Makefile.in
    M configure

  Log Message:
  -----------
  change enable_static_libs -> enable_shared_libs


  Commit: c195689442f09684a2330de64acd0c671db385b8
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/c195689442f09684a2330de64acd0c671db385b8
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-21 (Thu, 21 Jul 2016)

  Changed paths:
    M configure

  Log Message:
  -----------
  add fPIC to CXXFLAGS and FFLAGS if shared libs or LibraryLink build


  Commit: eba874a262ec14f731f15dc3ac5ae9b92036fa02
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/eba874a262ec14f731f15dc3ac5ae9b92036fa02
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-21 (Thu, 21 Jul 2016)

  Changed paths:
    M src/module.mk

  Log Message:
  -----------
  update linking cmd for libflexisusy for shared libraries


  Commit: 3c4631923b3db3f55cf7e45ea7766a79ad506450
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/3c4631923b3db3f55cf7e45ea7766a79ad506450
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-21 (Thu, 21 Jul 2016)

  Changed paths:
    M README
    M doc/building.dox

  Log Message:
  -----------
  update documentation on building shared libraries


  Commit: c0fa5870895d2b23c2c692d3c68d9261772b61ea
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/c0fa5870895d2b23c2c692d3c68d9261772b61ea
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-21 (Thu, 21 Jul 2016)

  Changed paths:
    M src/module.mk
    M templates/module.addon.mk.in
    M templates/module.mk.in

  Log Message:
  -----------
  link libphtread as last library since libsqlite3 might depend on it


  Commit: ae8f5cc65c07ac3c8aa972499cc2da321447c9e1
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/ae8f5cc65c07ac3c8aa972499cc2da321447c9e1
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-21 (Thu, 21 Jul 2016)

  Changed paths:
    M README
    M doc/building.dox

  Log Message:
  -----------
  update documenation on statically linked libraries


  Commit: 1f11fdff4eff9e1af61cfcede91ca3d5c14ff983
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/1f11fdff4eff9e1af61cfcede91ca3d5c14ff983
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-21 (Thu, 21 Jul 2016)

  Changed paths:
    M test/module.mk

  Log Message:
  -----------
  adapting test library creation to new ENABLE_SHARED_LIBS flag


  Commit: d173b97ed2bd51520d1e2ea4abb42abf8363ce45
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/d173b97ed2bd51520d1e2ea4abb42abf8363ce45
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-07-21 (Thu, 21 Jul 2016)

  Changed paths:
    M templates/librarylink.cpp.in
    M templates/librarylink.m.in

  Log Message:
  -----------
  allow user to input CKM and PMNS matrices


  Commit: 51051055ab9190e09652140249e14c6d8846857d
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/51051055ab9190e09652140249e14c6d8846857d
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-13 (Sat, 13 Aug 2016)

  Changed paths:
    M .gitattributes
    M ChangeLog
    M configure
    M createmodel
    M doc/model_file.dox
    M doc/release
    M doc/slha_input.dox
    M examples/customized-betas/LesHouches.in.MSSMcbs
    M examples/tower/LesHouches.in.tower
    M meta/CConversion.m
    M meta/Constraint.m
    M meta/EWSB.m
    M meta/FlexibleSUSY.m
    M meta/LoopMasses.m
    M meta/Parameters.m
    M meta/SelfEnergies.m
    M meta/ThreeLoopQCD.m
    M meta/WriteOut.m
    M model_files/BLSM/LesHouches.in.BLSM
    M model_files/BLSMlightZp/LesHouches.in.BLSMlightZp
    A model_files/BetaSM/FlexibleSUSY.m.in
    M model_files/CMSSM/LesHouches.in.CMSSM
    M model_files/CMSSMCPV/LesHouches.in.CMSSMCPV
    M model_files/CMSSMNoFV/LesHouches.in.CMSSMNoFV
    M model_files/DiracGauginos/LesHouches.in.DiracGauginos
    M model_files/E6SSM/LesHouches.in.E6SSM
    M model_files/HGTHDMIIMSSMBC/LesHouches.in.HGTHDMIIMSSMBC
    M model_files/HGTHDMIIMSSMBCApprox/LesHouches.in.HGTHDMIIMSSMBCApprox
    M model_files/HGTHDMIIMSSMBCFull/LesHouches.in.HGTHDMIIMSSMBCFull
    M model_files/HSSUSY/LesHouches.in.HSSUSY
    M model_files/HTHDMIIMSSMBC/LesHouches.in.HTHDMIIMSSMBC
    M model_files/LHInputMSSM/LesHouches.in.LHInputMSSM
    M model_files/MDM/LesHouches.in.MDM
    M model_files/MRSSM/LesHouches.in.MRSSM
    M model_files/MRSSM2/LesHouches.in.MRSSM2
    M model_files/MSSM/LesHouches.in.MSSM
    M model_files/MSSMNoFV/LesHouches.in.MSSMNoFV
    M model_files/MSSMNoFVSLHA2/LesHouches.in.MSSMNoFVSLHA2
    M model_files/MSSMNoFVatMGUT/LesHouches.in.MSSMNoFVatMGUT
    M model_files/MSSMatMGUT/LesHouches.in.MSSMatMGUT
    M model_files/NMSSM/LesHouches.in.NMSSM
    M model_files/NMSSMCPV/LesHouches.in.NMSSMCPV
    M model_files/NUHMSSM/LesHouches.in.NUHMSSM
    M model_files/NUTNMSSM/LesHouches.in.NUTNMSSM
    M model_files/NUTNMSSM/LesHouches.in.NUTNMSSM_1308.1333_BP1
    M model_files/NUTNMSSM/LesHouches.in.NUTNMSSM_1308.1333_BP2
    M model_files/NUTNMSSM/LesHouches.in.NUTNMSSM_1308.1333_BP3
    M model_files/NUTNMSSM/LesHouches.in.NUTNMSSM_GTP1
    M model_files/NUTNMSSM/LesHouches.in.NUTNMSSM_GTP2
    M model_files/NUTSMSSM/LesHouches.in.NUTSMSSM
    M model_files/SM/LesHouches.in.SM
    M model_files/SMHighScale/LesHouches.in.SMHighScale
    M model_files/SMSSM/LesHouches.in.SMSSM
    M model_files/SSM/LesHouches.in.SSM
    M model_files/SplitMSSM/LesHouches.in.SplitMSSM
    M model_files/THDMII/LesHouches.in.THDMII
    M model_files/THDMIIMSSMBC/LesHouches.in.THDMIIMSSMBC
    M model_files/THDMIIMSSMBCApprox/LesHouches.in.THDMIIMSSMBCApprox
    M model_files/THDMIIMSSMBCFull/LesHouches.in.THDMIIMSSMBCFull
    M model_files/TensorCoupling/LesHouches.in.TensorCoupling
    M model_files/U1xMSSM3G/LesHouches.in.U1xMSSM3G
    M model_files/UMSSM/LesHouches.in.UMSSM
    M model_files/YukawaCMSSM/FlexibleSUSY.m.in
    M model_files/cCMSSM/LesHouches.in.cCMSSM
    M model_files/complexMSSM/LesHouches.in.complexMSSM
    M model_files/lowMSSM/LesHouches.in.lowMSSM
    M model_files/lowNMSSM/LesHouches.in.TP1
    M model_files/lowNMSSM/LesHouches.in.TP2
    M model_files/lowNMSSM/LesHouches.in.TP3
    M model_files/lowNMSSM/LesHouches.in.TP4
    M model_files/lowNMSSM/LesHouches.in.TP5
    M model_files/lowNMSSM/LesHouches.in.TP6
    M model_files/lowNMSSMTanBetaAtMZ/LesHouches.in.TP1
    M model_files/lowNMSSMTanBetaAtMZ/LesHouches.in.TP2
    M model_files/lowNMSSMTanBetaAtMZ/LesHouches.in.TP3
    M model_files/lowNMSSMTanBetaAtMZ/LesHouches.in.TP4
    M model_files/lowNMSSMTanBetaAtMZ/LesHouches.in.TP5
    M model_files/lowNMSSMTanBetaAtMZ/LesHouches.in.TP6
    M model_files/minMSSM/FlexibleSUSY.m.in
    M model_files/munuSSM/LesHouches.in.munuSSM
    M model_files/rootMSSM/FlexibleSUSY.m.in
    M src/minimizer.hpp
    M src/module.mk
    A src/mssm_twoloophiggs.cpp
    R src/mssm_twoloophiggs.f
    M src/mssm_twoloophiggs.h
    A src/mssm_twoloophiggs.hpp
    A src/mssm_twoloophiggs_impl.f
    M src/nmssm2loop.h
    A src/nmssm_twoloophiggs.cpp
    R src/nmssm_twoloophiggs.h
    A src/nmssm_twoloophiggs.hpp
    M src/numerics2.hpp
    M src/root_finder.hpp
    M src/spectrum_generator_settings.cpp
    M src/spectrum_generator_settings.hpp
    M src/standard_model.cpp
    M src/standard_model.hpp
    M src/two_loop_corrections.hpp
    M templates/high_scale_spectrum_generator.hpp.in
    M templates/low_scale_spectrum_generator.hpp.in
    M templates/mass_eigenstates.cpp.in
    M templates/mass_eigenstates.hpp.in
    M templates/slha_io.cpp.in
    M templates/slha_io.hpp.in
    M templates/spectrum_generator_interface.hpp.in
    M templates/two_scale_high_scale_constraint.cpp.in
    M templates/two_scale_low_scale_constraint.cpp.in
    M templates/two_scale_soft_parameters.cpp.in
    M templates/two_scale_soft_parameters.hpp.in
    M templates/two_scale_susy_parameters.cpp.in
    M templates/two_scale_susy_parameters.hpp.in
    M templates/two_scale_susy_scale_constraint.cpp.in
    M templates/utilities.cpp.in
    M test/test_CConversion.m
    M test/test_CMSSMCPV_wrong_higgs_state.in.spc
    M test/test_CMSSM_benchmark.in.spc.in
    M test/test_CMSSM_gluino.spc.in
    M test/test_CMSSM_model.cpp
    M test/test_CMSSM_slha_doubled_blocks.spc.in
    M test/test_CMSSM_slha_output.in.spc
    M test/test_CMSSM_susy_scale_constraint.cpp
    M test/test_Constraint.m
    M test/test_E6SSM_nan.in.spc
    M test/test_HSSUSY_SUSYHD.sh
    M test/test_HSSUSY_SUSYHD_msq_m3_degenerate.in.spc
    M test/test_HSSUSY_SUSYHD_msq_msu_m3_degenerate.in.spc
    M test/test_HSSUSY_SUSYHD_msq_msu_m3_msusy_degenerate.in.spc
    M test/test_HSSUSY_SUSYHD_msu_m3_degenerate.in.spc
    M test/test_HSSUSY_SUSYHD_nondegenerate.in.spc
    M test/test_NMSSM.hpp
    M test/test_NMSSM_benchmark.in.spc.in
    M test/test_NMSSM_ewsb.cpp
    M test/test_NMSSM_slha_output.in.spc
    M test/test_NMSSM_susy_scale_constraint.cpp
    M test/test_NUTNMSSM_spectrum.cpp
    M test/test_ReadSLHA.m
    M test/test_SM_0L_RGEs.in.spc
    M test/test_ThreeLoopQCD.m

  Log Message:
  -----------
  Merge branch 'development' into feature-mathlink

Conflicts:
	src/module.mk


  Commit: 3c0b728efbc1c1ea2fc87c512657bff6a55e6ddb
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/3c0b728efbc1c1ea2fc87c512657bff6a55e6ddb
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-13 (Sat, 13 Aug 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  adapt libarylink to commit e04f45c


  Commit: bf4796f29faa93f5dcba5cfcebf5f1e4e7c9068e
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/bf4796f29faa93f5dcba5cfcebf5f1e4e7c9068e
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-13 (Sat, 13 Aug 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  fix compiler warnings


  Commit: ff7960bb94971355d2c50e5375b4e9ddcac5d733
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/ff7960bb94971355d2c50e5375b4e9ddcac5d733
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-13 (Sat, 13 Aug 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  catch potential non-perturbative running exception from QedQcd


  Commit: d8a87eff12ae60c24cf13616d8fb2c03040d72a0
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/d8a87eff12ae60c24cf13616d8fb2c03040d72a0
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-13 (Sat, 13 Aug 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  catch potential std::string exception from QedQcd


  Commit: fd6e9756907a264b1d0d5989e66d5ce225453ffb
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/fd6e9756907a264b1d0d5989e66d5ce225453ffb
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-18 (Thu, 18 Aug 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  correcting number of output arguments


  Commit: 025cae9a2bf549058969eac588f65b168e2ae451
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/025cae9a2bf549058969eac588f65b168e2ae451
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-18 (Thu, 18 Aug 2016)

  Changed paths:
    M doc/mathlink.dox
    M templates/librarylink.cpp.in
    M templates/librarylink.m.in
    M test/test_CMSSM_librarylink.m

  Log Message:
  -----------
  adding a Set[] function to modify model parameters / settings


  Commit: 47ce125a548b966567be41e801cbe6dcce96b67f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/47ce125a548b966567be41e801cbe6dcce96b67f
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-18 (Thu, 18 Aug 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  rename redirection class


  Commit: 5540266bbea3f1e446124ba8a2da03c3f47b1ab7
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/5540266bbea3f1e446124ba8a2da03c3f47b1ab7
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-18 (Thu, 18 Aug 2016)

  Changed paths:
    M README
    M config/Makefile.in
    M configure

  Log Message:
  -----------
  adding --enable-static for easy static linking


  Commit: 4b60867d7704cc15d3ce372c3fd8585adcfce45e
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/4b60867d7704cc15d3ce372c3fd8585adcfce45e
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-18 (Thu, 18 Aug 2016)

  Changed paths:
    M configure

  Log Message:
  -----------
  use pkg-config --static if enable_static == yes


  Commit: a3886f313e0db958118b901f6a90cdb015123471
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/a3886f313e0db958118b901f6a90cdb015123471
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-19 (Fri, 19 Aug 2016)

  Changed paths:
    M legacy/diagonalization.cpp
    M meta/FlexibleSUSY.m
    M meta/LoopMasses.m
    M meta/ThreeLoopQCD.m
    M src/error.hpp
    M src/linalg.cpp
    M src/linalg.h
    M src/lowe.cpp
    M src/module.mk
    M src/numerics.cpp
    M src/numerics.h
    A src/parallel.hpp
    M src/slha_io.hpp
    M src/standard_model.cpp
    M src/standard_model.hpp
    M src/xpr-base.h
    M templates/mass_eigenstates.cpp.in
    M templates/mass_eigenstates.hpp.in
    M templates/run.cpp.in
    M templates/run_cmd_line.cpp.in
    M templates/scan.cpp.in
    M templates/spectrum_generator_interface.hpp.in
    M test/test_ThreeLoopQCD.m
    M test/test_two_scale_mssm_solver.cpp

  Log Message:
  -----------
  Merge branch 'development' into feature-mathlink


  Commit: 9034a8e390bfdf2efb5a5483f639dd9aeb7b2703
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/9034a8e390bfdf2efb5a5483f639dd9aeb7b2703
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-19 (Fri, 19 Aug 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  no need to catch std::string


  Commit: 36fba3512ac2af606b0ac5bb1e9573fb6340475e
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/36fba3512ac2af606b0ac5bb1e9573fb6340475e
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-19 (Fri, 19 Aug 2016)

  Changed paths:
    M configure

  Log Message:
  -----------
  remove quotes around $pkg_flags


  Commit: 4ffb3b2f24f0600efee9400ee9b39347d387fa37
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/4ffb3b2f24f0600efee9400ee9b39347d387fa37
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-19 (Fri, 19 Aug 2016)

  Changed paths:
    M templates/librarylink.m.in
    M test/test_CMSSM_librarylink.m

  Log Message:
  -----------
  correcting passing the handle to FS at ModelName@Set[]


  Commit: 892dc0a63e04a16e29143eecb066cd2ee2f17ccc
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/892dc0a63e04a16e29143eecb066cd2ee2f17ccc
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-20 (Sat, 20 Aug 2016)

  Changed paths:
    A doc/images/Mh_Xt.png
    M doc/mathlink.dox
    M doc/module.mk

  Log Message:
  -----------
  adding neat example for the new LibraryLink interface


  Commit: 54a9e8e5854c3424eb788acb62783eefadfe1403
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/54a9e8e5854c3424eb788acb62783eefadfe1403
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-20 (Sat, 20 Aug 2016)

  Changed paths:
    M models/SoftsusyMSSM/module.mk
    M models/SoftsusyNMSSM/module.mk
    M models/sm/module.mk
    M models/smcw/module.mk

  Log Message:
  -----------
  adapt hard-coded model makefile modules to buildsystem changes


  Commit: b111a6c0c6ed66c0192d9b262f608d6abca19332
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b111a6c0c6ed66c0192d9b262f608d6abca19332
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-20 (Sat, 20 Aug 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  use std::move to prevent expensive copy


  Commit: 666e661394087104a114a5895107510e106b3d0c
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/666e661394087104a114a5895107510e106b3d0c
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-20 (Sat, 20 Aug 2016)

  Changed paths:
    M templates/module.mk.in

  Log Message:
  -----------
  rename makefile variables


  Commit: 23cae0bfc283def64097281411ecec1d6fa8e85e
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/23cae0bfc283def64097281411ecec1d6fa8e85e
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-20 (Sat, 20 Aug 2016)

  Changed paths:
    A doc/librarylink.dox
    M doc/mainpage.dox.in
    R doc/mathlink.dox

  Log Message:
  -----------
  rename doxygen file


  Commit: f56b2f31df3ee71eb674e9d10ba72f830d342741
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/f56b2f31df3ee71eb674e9d10ba72f830d342741
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-21 (Sun, 21 Aug 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  another use of std::move to avoid expenive copy


  Commit: 85974fef2926104574f2ac1c52d7a8c9cc3b37d2
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/85974fef2926104574f2ac1c52d7a8c9cc3b37d2
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-21 (Sun, 21 Aug 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  remove const in order to allow move to cast to an rvalue


  Commit: 21d85f030854a76ba33dc35735dad528103a3e10
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/21d85f030854a76ba33dc35735dad528103a3e10
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-23 (Tue, 23 Aug 2016)

  Changed paths:
    M meta/FlexibleSUSY.m
    M templates/module.mk
    A templates/run.m.in

  Log Message:
  -----------
  adding LibraryLink example for each model


  Commit: b48ff7392d2a118e817d953d5fa59612d5ba387f
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/b48ff7392d2a118e817d953d5fa59612d5ba387f
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-23 (Tue, 23 Aug 2016)

  Changed paths:
    M README

  Log Message:
  -----------
  update the README file


  Commit: 2f343df3d74502e2a31bd94c2db6a58440e99918
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/2f343df3d74502e2a31bd94c2db6a58440e99918
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-23 (Tue, 23 Aug 2016)

  Changed paths:
    M README

  Log Message:
  -----------
  update README file


  Commit: fd5ea28e35499ec767d0464ac7b5439761db6662
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/fd5ea28e35499ec767d0464ac7b5439761db6662
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-23 (Tue, 23 Aug 2016)

  Changed paths:
    M config/Makefile.in

  Log Message:
  -----------
  remove LibraryLink libs when clean-lib is called


  Commit: a05e024ce4d50b265b7be27dc37fa89eed6ef068
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/a05e024ce4d50b265b7be27dc37fa89eed6ef068
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-23 (Tue, 23 Aug 2016)

  Changed paths:
    M README
    M doc/librarylink.dox

  Log Message:
  -----------
  updating the documentation


  Commit: 88c4214ff1c962ca2a933edff4ce430554930d3c
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/88c4214ff1c962ca2a933edff4ce430554930d3c
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-29 (Mon, 29 Aug 2016)

  Changed paths:
    M ChangeLog
    M README
    M addons/GM2Calc/module.mk
    M addons/test_call_tsil/module.mk
    M config/Makefile.in
    M configure
    M doc/building.dox
    M fflite/module.mk
    M legacy/module.mk
    M meta/BetaFunction.m
    M meta/LoopMasses.m
    M meta/ThreeLoopQCD.m
    M model_files/SM/LesHouches.in.SM
    M models/SoftsusyMSSM/module.mk
    M models/SoftsusyNMSSM/module.mk
    M models/sm/module.mk
    M models/smcw/module.mk
    M src/fixed_point_iterator.hpp
    M src/module.mk
    M src/mssm_twoloophiggs.cpp
    M src/nmssm_twoloophiggs.cpp
    M src/parallel.hpp
    M src/standard_model.cpp
    M templates/effective_couplings.cpp.in
    M templates/effective_couplings.hpp.in
    M templates/mass_eigenstates.cpp.in
    M templates/module.addon.mk.in
    M templates/module.mk.in
    M templates/utilities.cpp.in
    M templates/utilities.hpp.in
    M test/module.mk
    A test/test_SM_three_loop_spectrum.cpp

  Log Message:
  -----------
  Merge branch 'development' into feature-mathlink

Conflicts:
	config/Makefile.in
	models/sm/module.mk
	models/smcw/module.mk


  Commit: cc2b310decae2256b6866ff678b5806a7e141ae3
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/cc2b310decae2256b6866ff678b5806a7e141ae3
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-29 (Mon, 29 Aug 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  remove comment that is not helpful


  Commit: f8e9c1dd208241af1581d1d6d7e5f44c0e29899e
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/f8e9c1dd208241af1581d1d6d7e5f44c0e29899e
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-29 (Mon, 29 Aug 2016)

  Changed paths:
    M templates/librarylink.cpp.in

  Log Message:
  -----------
  remove unused header


  Commit: 2a8eb37c1cd2be9c3ab2f35314d349571aaba53d
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/2a8eb37c1cd2be9c3ab2f35314d349571aaba53d
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-29 (Mon, 29 Aug 2016)

  Changed paths:
    M README

  Log Message:
  -----------
  better wording


  Commit: f5a481cdbd7363d396848725f829cab17552e29a
      https://github.com/FlexibleSUSY/FlexibleSUSY/commit/f5a481cdbd7363d396848725f829cab17552e29a
  Author: Alexander Voigt <Alexander.Voigt at desy.de>
  Date:   2016-08-29 (Mon, 29 Aug 2016)

  Changed paths:
    M ChangeLog

  Log Message:
  -----------
  update ChangeLog


Compare: https://github.com/FlexibleSUSY/FlexibleSUSY/compare/d5ea9b74e8fc...f5a481cdbd73


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