[Rivet] ISSUE Installing RIVET on LXPLUS

MICHELE GROSSI michele.grossi01 at universitadipavia.it
Tue Jan 2 14:31:38 GMT 2018

Next message: [Rivet] ISSUE Installing RIVET on LXPLUS
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Deat RIVET Team,
I am following the instruction to setup and install Rivet on lxplus but I
got error.
May I ask your support,
Thank you
Michele

In the following the output of:

mgrossi at lxplus068 mgrossi]$ ./rivet-bootstrap-lcg
/cvmfs/sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++
accepts the -std=c++11 flag: hurrah! Continuing installation...

Running Rivet bootstrap script with LCG HepMC, FastJet, and GSL
Building Rivet 2.5.4, YODA 1.6.7

Building YODA
--2018-01-02 15:02:52--
http://www.hepforge.org/archive/yoda/YODA-1.6.7.tar.gz
Resolving www.hepforge.org... 129.234.186.115
Connecting to www.hepforge.org|129.234.186.115|:80... connected.
HTTP request sent, awaiting response... 301 Moved Permanently
Location: https://www.hepforge.org/archive/yoda/YODA-1.6.7.tar.gz
[following]
--2018-01-02 15:02:52--
https://www.hepforge.org/archive/yoda/YODA-1.6.7.tar.gz
Connecting to www.hepforge.org|129.234.186.115|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 1097370 (1.0M) [application/x-gzip]
Saving to: “STDOUT”

100%[==========================================================>]
1,097,370 1.45M/s in 0.7s

2018-01-02 15:02:53 (1.45 MB/s) - written to stdout [1097370/1097370]

checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking for style of include used by make... GNU
checking for gcc... /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc accepts -g...
yes
checking for /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc option to
accept ISO C89... none needed
checking whether /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc understands
-c and -o together... yes
checking dependency style of /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc... gcc3
checking for ar... ar
checking the archiver (ar) interface... ar
checking for sw_vers... no
checking whether we are using the GNU C++ compiler... yes
checking whether /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ accepts -g...
yes
checking dependency style of /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++... gcc3
checking whether /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ supports
C++11 features by default... no
checking whether /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ supports
C++11 features with -std=c++11... yes
checking whether ln -s works... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1966080
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to
x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain
format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc supports
-fno-rtti -fno-exceptions... no
checking for /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc option to
produce PIC... -fPIC -DPIC
checking if /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc PIC flag
-fPIC -DPIC works... yes
checking if /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc static flag
-static works... yes
checking if /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc supports -c
-o file.o... yes
checking if /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc supports -c
-o file.o... (cached) yes
checking whether the /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/gcc linker
(/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for shl_load... no
checking for shl_load in -ldld... no
checking for dlopen... no
checking for dlopen in -ldl... yes
checking whether a program can dlopen itself... yes
checking whether a statically linked program can dlopen itself... no
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11 -E
checking for ld used by /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11...
/usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11
linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11
option to produce PIC... -fPIC -DPIC
checking if /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11
PIC flag -fPIC -DPIC works... yes
checking if /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11
static flag -static works... yes
checking if /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11
supports -c -o file.o... yes
checking if /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11
supports -c -o file.o... (cached) yes
checking whether the /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11
linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if the /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11
compiler accepts the -pedantic flag... yes
checking if the /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11
compiler accepts the -Wall flag... yes
checking for root-config... /usr/bin/root-config
checking ROOT version... 5.34/36 (5,34,36)
configure: Building extra ROOT compatibility tools
checking for python... /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/Python/2.7.10/x86_64-slc6-gcc49-opt/bin/python
checking for a version of Python >= '2.1.0'... yes
checking for a version of Python >= '2.6'... yes
checking for the distutils Python package... yes
checking for Python include path... -I/cvmfs/
sft.cern.ch/lcg/releases/LCG_85/Python/2.7.10/x86_64-slc6-gcc49-opt/include/python2.7
checking for Python library path... -L/cvmfs/
sft.cern.ch/lcg/releases/LCG_85/Python/2.7.10/x86_64-slc6-gcc49-opt/lib
-lpython2.7
checking for Python site-packages path... /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/Python/2.7.10/x86_64-slc6-gcc49-opt/lib/python2.7/site-packages
checking python extra libraries... -lpthread -ldl -lutil -lm
checking python extra linking flags...
checking consistency of all components of python development environment...
yes
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory...
${prefix}/lib/python2.7/site-packages
checking for python extension module directory...
${exec_prefix}/lib/python2.7/site-packages
checking for Cython >= 0.23.5... no
checking for pyext/yoda/core.cpp... yes
checking if the /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11
compiler accepts the -Wno-unused-but-set-variable flag... yes
checking if the /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11
compiler accepts the -Wno-sign-compare flag... yes
checking if the /cvmfs/
sft.cern.ch/lcg/releases/LCG_85/gcc/4.9.3/x86_64-slc6/bin/g++ -std=c++11
compiler accepts the -Wno-strict-prototypes flag... no
configure: All Python build checks successful: 'yoda' Python extension will
be built
checking for doxygen... /usr/bin/doxygen
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating Doxyfile
config.status: creating include/Makefile
config.status: creating include/YODA/Makefile
config.status: creating src/Makefile
config.status: creating src/tinyxml/Makefile
config.status: creating tests/Makefile
config.status: creating pyext/Makefile
config.status: creating pyext/setup.py
config.status: creating pyext/yoda/Makefile
config.status: creating bin/Makefile
config.status: creating bin/yoda-config
config.status: creating yodaenv.sh
config.status: creating yoda.pc
config.status: creating include/YODA/Config/DummyConfig.h
config.status: creating include/YODA/Config/YodaConfig.h
config.status: include/YODA/Config/YodaConfig.h is unchanged
config.status: creating include/YODA/Config/BuildConfig.h
config.status: include/YODA/Config/BuildConfig.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands

************************************************************
YODA CONFIGURED!

Now build and install (to the /afs/cern.ch/work/m/mgrossi/RIVET/local tree)
with e.g.
make -j2 && make -j2 install
************************************************************
Making all in src
make[1]: Entering directory `/afs/
cern.ch/work/m/mgrossi/RIVET/YODA-1.6.7/src'
Making all in tinyxml
make[2]: Entering directory `/afs/
cern.ch/work/m/mgrossi/RIVET/YODA-1.6.7/src/tinyxml'
CXX libtinyxml_la-tinyxmlerror.lo
CXX libtinyxml_la-tinystr.lo
CXX libtinyxml_la-tinyxml.lo
g++: internal compiler error: Segmentation fault (program cc1plus)
0x409edc execute
../../gcc-4.9.3/gcc/gcc.c:2854
0x40a2a4 do_spec_1
../../gcc-4.9.3/gcc/gcc.c:4658
0x40cb66 process_brace_body
../../gcc-4.9.3/gcc/gcc.c:5941
0x40cb66 handle_braces
../../gcc-4.9.3/gcc/gcc.c:5855
0x40b119 do_spec_1
../../gcc-4.9.3/gcc/gcc.c:5312
0x40cb66 process_brace_body
../../gcc-4.9.3/gcc/gcc.c:5941
0x40cb66 handle_braces
../../gcc-4.9.3/gcc/gcc.c:5855
0x40b119 do_spec_1
../../gcc-4.9.3/gcc/gcc.c:5312
0x40ae83 do_spec_1
../../gcc-4.9.3/gcc/gcc.c:5427
0x40cb66 process_brace_body
../../gcc-4.9.3/gcc/gcc.c:5941
0x40cb66 handle_braces
../../gcc-4.9.3/gcc/gcc.c:5855
0x40b119 do_spec_1
../../gcc-4.9.3/gcc/gcc.c:5312
0x40cb66 process_brace_body
../../gcc-4.9.3/gcc/gcc.c:5941
0x40cb66 handle_braces
../../gcc-4.9.3/gcc/gcc.c:5855
0x40b119 do_spec_1
../../gcc-4.9.3/gcc/gcc.c:5312
0x40cb66 process_brace_body
../../gcc-4.9.3/gcc/gcc.c:5941
0x40cb66 handle_braces
../../gcc-4.9.3/gcc/gcc.c:5855
0x40b119 do_spec_1
../../gcc-4.9.3/gcc/gcc.c:5312
0x40cb66 process_brace_body
../../gcc-4.9.3/gcc/gcc.c:5941
0x40cb66 handle_braces
../../gcc-4.9.3/gcc/gcc.c:5855
Please submit a full bug report,
with preprocessed source if appropriate.
Please include the complete backtrace with any bug report.
See <http://gcc.gnu.org/bugs.html> for instructions.
make[2]: *** [libtinyxml_la-tinystr.lo] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: Leaving directory `/afs/
cern.ch/work/m/mgrossi/RIVET/YODA-1.6.7/src/tinyxml'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/afs/cern.ch/work/m/mgrossi/RIVET/YODA-1.6.7/src
'
make: *** [all-recursive] Error 1
[mgrossi at lxplus068 RIVET]$ gcc --v
gcc: error: unrecognized command line option ‘--v’
gcc: fatal error: no input files
compilation terminated.
[mgrossi at lxplus068 RIVET]$ gcc -version
gcc: error: unrecognized command line option ‘-version’
gcc: fatal error: no input files
compilation terminated.

HERE the gcc version
[mgrossi at lxplus068 RIVET]$ gcc --version
gcc (GCC) 4.9.3
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
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